AnantharamanLab/METABOLIC: A scalable high- - GitHub
This software enables the prediction of metabolic and biogeochemical functional trait profiles to any given genome datasets. These genome datasets can either be metagenome-assembled genomes (MAGs), single-cell amplified genomes (SAGs) or isolated strain sequenced genomes.
METABOLIC: high-throughput profiling of microbial genomes for ...
2022年2月16日 · Here, we present the software METABOLIC (METabolic And BiogeOchemistry anaLyses In miCrobes), a toolkit to profile metabolic and biogeochemical traits, and functional networks in microbial communities based on microbial genomes.
Genome scale metabolic network modelling for metabolic profile …
2024年2月22日 · Metabolic profiling (metabolomics) aims at measuring small molecules (metabolites) in complex samples like blood or urine for human health studies. While biomarker-based assessment often relies on a single molecule, metabolic profiling combines several metabolites to create a more complex and more specific fingerprint of the disease.
How to Design a Metabolic Profile. But first, let’s learn about. NEAT. What. is NEAT? Non-Exercise Activity Thermogenesis. Fidgeting, moving, toe tapping, shopping. Spontaneous Physical Activity. Pioneer NEAT Study! Science, January 2005, Vol 307, pp. 584-586. Measuring NEAT. Instrumentation: inclinometers and triaxial.
Predicting the final metabolic profile based on the ... - mSystems
2024年1月11日 · Each pie represents one metabolic profile classified by metabolic categories. Circles represent measured metabolic values, and triangles represent predicted metabolic values. Lines connecting the circles and triangles indicate the distances between the measured and predicted profiles.
Strategies for Comparing Metabolic Profiles: Implications for the ...
All metrics treat a metabolic profile as a high-dimensional vector, whose dimension equals the number of metabolites, and calculate the difference between two profiles (such as the profiles in a healthy and a cancer cell) using their own characteristic formulae.
Metabolomics: A High-Throughput Platform for Metabolite Profile ...
Metabolomics aims to quantitatively measure small-molecule metabolites in biological samples, such as bodily fluids (e.g., urine, blood, and saliva), tissues, and breathe exhalation, which reflects metabolic responses of a living system to pathophysiological stimuli or genetic modification.
Metabolomic profiles predict individual multidisease outcomes
2022年9月22日 · Here we explored the potential of nuclear magnetic resonance (NMR) spectroscopy-derived metabolomic profiles to inform on multidisease risk beyond conventional clinical predictors for the onset of...
13C metabolic flux analysis (MFA) is a mathematical approach for quantifying intracellular metabolic fluxes in cancer cells.
METABOLIC: high-throughput profiling of microbial genomes for ...
2022年2月16日 · Here, we present the software METABOLIC (METabolic And BiogeOchemistry anaLyses In miCrobes), a toolkit to profile metabolic and biogeochemical traits, and functional networks in microbial communities based on microbial genomes.