GitHub - davidemms/STAG: STAG: Species Tree from All Genes
STAG is a method for inferring a species tree from a set of gene trees. It can use gene trees inferred from any gene family that contains all the species under consideration. These gene familes can contain paralogues, co-orthologues, or any number of gene duplcation events, and thus STAG is not limited to analysis of gene trees inferred from ...
STAG: Species Tree Inference from All Genes - Semantic Scholar
2018年2月19日 · Here we propose a novel method for species tree inference called STAG that is specifically designed to leverage data from multi-copy gene families. By application to 12 real species datasets sampled from across the eukaryotic domain we demonstrate that species trees inferred from multi-copy gene families are comparable in accuracy to species ...
STAG/README.md at master · davidemms/STAG - GitHub
STAG is a method for inferring a species tree from a set of gene trees. It can use gene trees inferred from any gene family that contains all the species under consideration.
STAG: Species Tree Inference from All Genes - bioRxiv
2018年2月19日 · Here we propose a novel method for species tree inference called STAG that is specifically designed to leverage data from multi-copy gene families. By application to 12 real species datasets sampled from across the eukaryotic domain we demonstrate that species trees inferred from multi-copy gene families are comparable in accuracy to species ...
2018年2月19日 · 56 species tree from sets of multi-copy gene trees. Through application to 12 real world datasets 57 sampled throughout the eukaryotic domain we show that STAG is the most accurate method for
STAG: Species Tree Inference from All Genes - ResearchGate
2018年2月19日 · We reveal that on real species datasets STAG has higher accuracy than other leading methods for species tree inference; including concatenated alignments of protein sequences, ASTRAL & NJst....
STAG: Species Tree Inference from All Genes - Department of …
Here we propose a novel method for species tree inference called STAG that is specifically designed to leverage data from multi-copy gene families. By application to 12 real species datasets sampled from across the eukaryotic domain we demonstrate that species trees inferred from multi-copy gene families are comparable in accuracy to species ...
STAG: Species Tree Inference from All Genes - ScienceOpen
2018年2月19日 · Here we propose a novel method for species tree inference called STAG that is specifically designed to leverage data from multi-copy gene families. By application to 12 real species datasets sampled from across the eukaryotic domain we demonstrate that species trees inferred from multi-copy gene families are comparable in accuracy to species ...
STAG: Species Tree Inference from All Genes - Europe PMC
2018年2月19日 · Here we propose a novel method for species tree inference called STAG that is specifically designed to leverage data from multi-copy gene families. By application to 12 real species datasets sampled from across the eukaryotic domain we demonstrate that species trees inferred from multi-copy gene families are comparable in accuracy to species ...
STRIDE: Species Tree Root Inference from Gene Duplication Events
2017年5月19日 · This work proposes a novel method for species tree inference called STAG that is specifically designed to leverage data from multi-copy gene families and reveals that on real species datasets STAG has higher accuracy than other leading methods for Species tree inference; including concatenated alignments of protein sequences, ASTRAL & NJst.
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